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  5. GSVIVT01019052001

GSVIVT01019052001


Description : RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease


Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0000940 (LandPlants) Phylogenetic Tree(s): OG_05_0000940_tree ,
OG_06_0002089 (SeedPlants) Phylogenetic Tree(s): OG_06_0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019052001
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.02 Archaeplastida
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Archaeplastida
Gb_34767 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.02 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_108060g0010 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.05 Archaeplastida
MA_9225368g0010 No alias No annotation 0.04 Archaeplastida
Pp3c26_370V3.1 No alias dicer-like 4 0.02 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc07g005030.4.1 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 Archaeplastida
Solyc08g067200.2.1 No alias Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 331 437
IPR003100 PAZ_dom 770 899
IPR005034 Dicer_dimerisation_dom 507 587
IPR000999 RNase_III_dom 1131 1241
IPR000999 RNase_III_dom 941 1059
IPR006935 Helicase/UvrB_N 5 137
No external refs found!