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  5. GSVIVT01019231001

GSVIVT01019231001


Description : Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019231001
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00210570 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00060p00130100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.04 Archaeplastida
AMTR_s00066p00131520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
AMTR_s00078p00125150 No alias Pentatricopeptide repeat-containing protein At2g02750... 0.03 Archaeplastida
AMTR_s00081p00019740 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g27110... 0.04 Archaeplastida
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 Archaeplastida
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT1G71490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT2G04860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida
AT2G22410 SLO1 SLOW GROWTH 1 0.05 Archaeplastida
AT2G34400 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT4G32430 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01011479001 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_02086 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_06272 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_10726 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_11981 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Gb_15639 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_21439 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_40047 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
LOC_Os01g01115.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os01g19380.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os01g40720.1 No alias RNA editing factor (MEF7) 0.07 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
LOC_Os02g18810.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
LOC_Os05g49740.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.12 Archaeplastida
LOC_Os05g50460.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os06g49185.1 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.1 Archaeplastida
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
LOC_Os08g33700.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_139163g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Smo100125 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Smo21427 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Smo70490 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc01g006920.4.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.04 Archaeplastida
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 Archaeplastida
Solyc02g080350.1.1 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.07 Archaeplastida
Solyc02g082160.2.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.11 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc03g115570.1.1 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.04 Archaeplastida
Solyc04g005460.1.1 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.04 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.03 Archaeplastida
Solyc04g063300.3.1 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc06g035600.3.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc07g053520.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc09g007040.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.06 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Solyc09g065710.1.1 No alias RNA editing factor (OTP86) 0.05 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.05 Archaeplastida
Solyc09g090220.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.07 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Solyc11g065250.1.1 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Zm00001e000335_P001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
Zm00001e002234_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e002505_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e003562_P001 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.03 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.04 Archaeplastida
Zm00001e008200_P001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Zm00001e009339_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e009484_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.06 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e011519_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.07 Archaeplastida
Zm00001e012607_P002 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Zm00001e014800_P001 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.07 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.04 Archaeplastida
Zm00001e018597_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.05 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.06 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e023333_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.07 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.07 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
Zm00001e036301_P001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.04 Archaeplastida
Zm00001e036302_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.03 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 286
IPR002885 Pentatricopeptide_repeat 320 350
IPR002885 Pentatricopeptide_repeat 289 318
IPR002885 Pentatricopeptide_repeat 182 206
IPR002885 Pentatricopeptide_repeat 79 126
IPR002885 Pentatricopeptide_repeat 418 465
IPR002885 Pentatricopeptide_repeat 154 177
IPR032867 DYW_dom 592 716
No external refs found!