AMTR_s00040p00128880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.96

Description : F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana


Gene families : OG0000360 (Archaeplastida) Phylogenetic Tree(s): OG0000360_tree ,
OG_05_0000186 (LandPlants) Phylogenetic Tree(s): OG_05_0000186_tree ,
OG_06_0000535 (SeedPlants) Phylogenetic Tree(s): OG_06_0000535_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00128880
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00248090 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00017p00248550 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00030p00242200 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00040p00064030 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00040p00125130 evm_27.TU.AmTr_v1... F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s03421p00001220 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004150 dihydroneopterin aldolase activity IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 4 42
No external refs found!