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  5. AMTR_s00040p00133900

AMTR_s00040p00133900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.101

Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.VAMP7-type protein


Gene families : OG0000293 (Archaeplastida) Phylogenetic Tree(s): OG0000293_tree ,
OG_05_0006389 (LandPlants) Phylogenetic Tree(s): OG_05_0006389_tree ,
OG_06_0009833 (SeedPlants) Phylogenetic Tree(s): OG_06_0009833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00133900
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
LOC_Os06g07780.1 No alias VAMP7-type R-type SNARE longin protein 0.03 Archaeplastida
LOC_Os07g09600.1 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 Archaeplastida
Zm00001e011409_P003 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006098 pentose-phosphate shunt IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
BP GO:0051156 glucose 6-phosphate metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010908 Longin_dom 28 111
IPR001388 Synaptobrevin 126 213
No external refs found!