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  5. GSVIVT01019405001

GSVIVT01019405001


Description : Probable polygalacturonase OS=Vitis vinifera


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0002536 (SeedPlants) Phylogenetic Tree(s): OG_06_0002536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01019405001
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
AT1G19170 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT2G23900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G41870 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G49215 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01015044001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 Archaeplastida
GSVIVT01028057001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 Archaeplastida
Gb_23153 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
LOC_Os01g43160.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
LOC_Os02g15690.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
LOC_Os02g54030.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
LOC_Os12g36810.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.06 Archaeplastida
MA_10430135g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
MA_98717g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Solyc08g082170.4.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 Archaeplastida
Solyc09g075460.3.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 Archaeplastida
Zm00001e006249_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e021051_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.03 Archaeplastida
Zm00001e023760_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Zm00001e024829_P001 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 149 332
IPR024535 Pectate_lyase_SF_prot 55 110
No external refs found!