GSVIVT01019516001

Description : Probable polygalacturonase OS=Vitis vinifera

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0005547 (SeedPlants) Phylogenetic Tree(s): OG_06_0005547_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01019516001
Cluster	HCCA: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00258260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.05	Archaeplastida
AMTR_s00131p00115550	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AT2G23900	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G06770	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01028057001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
GSVIVT01028246001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
Gb_28001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Gb_39001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
LOC_Os01g43160.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
LOC_Os02g15690.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
LOC_Os02g54030.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
LOC_Os05g50960.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
MA_10430135g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
MA_10435166g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Zm00001e006249_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida
Zm00001e027889_P004	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
Zm00001e039674_P002	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015689	molybdate ion transport	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	139	420

External Links

No external refs found!

GSVIVT01019516001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation