GSVIVT01020008001

Description : Cullin-3A OS=Arabidopsis thaliana

Gene families : OG0001033 (Archaeplastida) Phylogenetic Tree(s): OG0001033_tree ,
OG_05_0002897 (LandPlants) Phylogenetic Tree(s): OG_05_0002897_tree ,
OG_06_0002759 (SeedPlants) Phylogenetic Tree(s): OG_06_0002759_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020008001
Cluster	HCCA: Cluster_221

Target	Alias	Description	ECC score	Gene Family Method
AT5G46210	ATCUL4, CUL4	cullin4	0.03	Archaeplastida
Cpa\|evm.model.tig00000157.110	No alias	Cullin-4 OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_08576	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.03	Archaeplastida
Gb_08728	No alias	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.04	Archaeplastida
LOC_Os02g51180.1	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.03	Archaeplastida
LOC_Os03g57290.1	No alias	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.03	Archaeplastida
LOC_Os08g07400.1	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.03	Archaeplastida
MA_36374g0010	No alias	Cullin-4 OS=Arabidopsis thaliana (sp\|q8lgh4\|cul4_arath : 352.0)	0.09	Archaeplastida
Mp1g07340.1	No alias	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.04	Archaeplastida
Mp4g12190.1	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.03	Archaeplastida
Pp3c11_21000V3.1	No alias	cullin 3	0.02	Archaeplastida
Pp3c12_14490V3.1	No alias	cullin4	0.04	Archaeplastida
Pp3c3_20200V3.1	No alias	cullin4	0.02	Archaeplastida
Pp3c4_7910V3.1	No alias	cullin4	0.03	Archaeplastida
Pp3c7_5730V3.1	No alias	cullin 3	0.04	Archaeplastida
Smo98006	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Smo98222	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.02	Archaeplastida
Solyc01g010820.3.1	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.07	Archaeplastida
Solyc02g021470.4.1	No alias	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.03	Archaeplastida
Solyc02g087900.3.1	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.02	Archaeplastida
Zm00001e005919_P001	No alias	scaffold component CUL4 of CUL4-DDB1 ubiquitination...	0.06	Archaeplastida
Zm00001e040141_P001	No alias	scaffold component CUL3 of CUL3-BTB E3 ligase complexes	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0009678	hydrogen-translocating pyrophosphatase activity	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015672	monovalent inorganic cation transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
CC	GO:0031011	Ino80 complex	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
CC	GO:0033202	DNA helicase complex	IEP	Neighborhood
BP	GO:0034220	ion transmembrane transport	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044454	nuclear chromosome part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
CC	GO:0097346	INO80-type complex	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:0098655	cation transmembrane transport	IEP	Neighborhood
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Neighborhood
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood
CC	GO:1904949	ATPase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001373	Cullin_N	341	400
IPR001373	Cullin_N	29	342
IPR001373	Cullin_N	409	550
IPR019559	Cullin_neddylation_domain	582	642

External Links

No external refs found!

GSVIVT01020008001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation