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  5. AMTR_s00040p00174700

AMTR_s00040p00174700 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.163

Description : Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana


Gene families : OG0015480 (Archaeplastida) Phylogenetic Tree(s): OG0015480_tree ,
OG_05_0015333 (LandPlants) Phylogenetic Tree(s): OG_05_0015333_tree ,
OG_06_0015031 (SeedPlants) Phylogenetic Tree(s): OG_06_0015031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00174700
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036186001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
LOC_Os02g32780.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Zm00001e014716_P001 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 212 239
IPR002885 Pentatricopeptide_repeat 598 623
IPR002885 Pentatricopeptide_repeat 496 520
IPR002885 Pentatricopeptide_repeat 570 593
IPR002885 Pentatricopeptide_repeat 468 491
IPR002885 Pentatricopeptide_repeat 11 34
IPR002885 Pentatricopeptide_repeat 632 658
IPR002885 Pentatricopeptide_repeat 669 689
IPR002885 Pentatricopeptide_repeat 108 156
IPR002885 Pentatricopeptide_repeat 392 439
No external refs found!