GSVIVT01020240001


Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Prp17 component


Gene families : OG0005608 (Archaeplastida) Phylogenetic Tree(s): OG0005608_tree ,
OG_05_0006441 (LandPlants) Phylogenetic Tree(s): OG_05_0006441_tree ,
OG_06_0006648 (SeedPlants) Phylogenetic Tree(s): OG_06_0006648_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020240001
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Cre04.g226450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Gb_09562 No alias component Prp17 of non-snRNP MOS4-associated complex 0.04 Archaeplastida
Mp1g17450.1 No alias component Prp17 of non-snRNP MOS4-associated complex 0.02 Archaeplastida
Pp3c5_27650V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Archaeplastida
Smo78344 No alias RNA processing.RNA splicing.spliceosome-associated... 0.05 Archaeplastida
Solyc02g078970.4.1 No alias component Prp17 of non-snRNP MOS4-associated complex 0.07 Archaeplastida
Zm00001e001921_P002 No alias component Prp17 of non-snRNP MOS4-associated complex 0.05 Archaeplastida
Zm00001e038006_P002 No alias component Prp17 of non-snRNP MOS4-associated complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 467 504
IPR001680 WD40_repeat 247 285
IPR001680 WD40_repeat 333 370
IPR001680 WD40_repeat 204 242
IPR001680 WD40_repeat 426 461
No external refs found!