Description : Cell cycle.interphase.DNA replication.preinitiation.TOP1 DNA topoisomerase
Gene families : OG0003801 (Archaeplastida) Phylogenetic Tree(s): OG0003801_tree ,
OG_05_0003801 (LandPlants) Phylogenetic Tree(s): OG_05_0003801_tree ,
OG_06_0004899 (SeedPlants) Phylogenetic Tree(s): OG_06_0004899_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01020301001 | |
Cluster | HCCA: Cluster_236 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00059p00193620 | evm_27.TU.AmTr_v1... | Cell cycle.interphase.DNA replication.preinitiation.TOP1... | 0.08 | Archaeplastida | |
AMTR_s00061p00026580 | evm_27.TU.AmTr_v1... | Cell cycle.interphase.DNA replication.preinitiation.TOP1... | 0.03 | Archaeplastida | |
AT5G55300 | MGO1, TOP1, TOP1ALPHA | DNA topoisomerase I alpha | 0.07 | Archaeplastida | |
Gb_13084 | No alias | DNA topoisomerase (TOP1) | 0.04 | Archaeplastida | |
Mp6g05370.1 | No alias | DNA topoisomerase (TOP1) | 0.04 | Archaeplastida | |
Pp3c13_14620V3.1 | No alias | DNA topoisomerase 1 beta | 0.02 | Archaeplastida | |
Pp3c3_12300V3.1 | No alias | DNA topoisomerase 1 beta | 0.03 | Archaeplastida | |
Smo109207 | No alias | Cell cycle.interphase.DNA replication.preinitiation.TOP1... | 0.02 | Archaeplastida | |
Smo145504 | No alias | Cell cycle.interphase.DNA replication.preinitiation.TOP1... | 0.04 | Archaeplastida | |
Smo152781 | No alias | Cell cycle.interphase.DNA replication.preinitiation.TOP1... | 0.02 | Archaeplastida | |
Solyc07g049720.4.1 | No alias | DNA topoisomerase (TOP1) | 0.06 | Archaeplastida | |
Zm00001e021739_P002 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003917 | DNA topoisomerase type I activity | IEA | Interproscan |
CC | GO:0005694 | chromosome | IEA | Interproscan |
BP | GO:0006265 | DNA topological change | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003909 | DNA ligase activity | IEP | Neighborhood |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Neighborhood |
MF | GO:0004826 | phenylalanine-tRNA ligase activity | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
BP | GO:0006310 | DNA recombination | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0007062 | sister chromatid cohesion | IEP | Neighborhood |
BP | GO:0007064 | mitotic sister chromatid cohesion | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Neighborhood |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
No external refs found! |