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  5. AMTR_s00040p00182900

AMTR_s00040p00182900 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.178

No description available


Gene families : OG0003310 (Archaeplastida) Phylogenetic Tree(s): OG0003310_tree ,
OG_05_0009785 (LandPlants) Phylogenetic Tree(s): OG_05_0009785_tree ,
OG_06_0007958 (SeedPlants) Phylogenetic Tree(s): OG_06_0007958_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00182900
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034750001 No alias No description available 0.03 Archaeplastida
GSVIVT01035731001 No alias No description available 0.02 Archaeplastida
Pp3c7_14100V3.1 No alias Enhancer of polycomb-like transcription factor protein 0.04 Archaeplastida
Smo444069 No alias No description available 0.04 Archaeplastida
Solyc08g067920.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e022270_P001 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019542 Enhancer_polycomb-like_N 790 879
No external refs found!