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  5. GSVIVT01020528001

GSVIVT01020528001


Description : Protein modification.phosphorylation.atypical kinase families.TAF kinase


Gene families : OG0002996 (Archaeplastida) Phylogenetic Tree(s): OG0002996_tree ,
OG_05_0003348 (LandPlants) Phylogenetic Tree(s): OG_05_0003348_tree ,
OG_06_0005183 (SeedPlants) Phylogenetic Tree(s): OG_06_0005183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020528001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 evm_27.TU.AmTr_v1... Protein modification.phosphorylation.atypical kinase... 0.04 Archaeplastida
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.13 Archaeplastida
Cpa|evm.model.tig00020903.20 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre10.g425501 No alias Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.05 Archaeplastida
LOC_Os06g43790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.09 Archaeplastida
MA_10432545g0020 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.02 Archaeplastida
MA_854546g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp5g22790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.09 Archaeplastida
Pp3c10_350V3.1 No alias HAC13 protein (HAC13) 0.09 Archaeplastida
Pp3c14_1870V3.1 No alias HAC13 protein (HAC13) 0.06 Archaeplastida
Smo409957 No alias Protein modification.phosphorylation.atypical kinase... 0.05 Archaeplastida
Solyc07g006820.4.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.12 Archaeplastida
Zm00001e037464_P001 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022591 TFIID_sub1_DUF3591 464 1034
IPR001487 Bromodomain 1686 1760
IPR000626 Ubiquitin_dom 549 619
No external refs found!