1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01020533001

GSVIVT01020533001


Description : Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000235 (Archaeplastida) Phylogenetic Tree(s): OG0000235_tree ,
OG_05_0000298 (LandPlants) Phylogenetic Tree(s): OG_05_0000298_tree ,
OG_06_0003159 (SeedPlants) Phylogenetic Tree(s): OG_06_0003159_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01020533001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00190720 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
AMTR_s00024p00251490 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
AMTR_s00095p00027730 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80270,... 0.02 Archaeplastida
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.04 Archaeplastida
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.07 Archaeplastida
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 Archaeplastida
Gb_14211 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
Gb_20238 No alias RNA editing factor (POCO) 0.05 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.02 Archaeplastida
LOC_Os01g17320.1 No alias RNA editing factor (POCO) 0.04 Archaeplastida
LOC_Os01g19490.1 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Archaeplastida
LOC_Os01g19548.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Archaeplastida
LOC_Os02g55310.1 No alias Pentatricopeptide repeat-containing protein At5g27460... 0.04 Archaeplastida
LOC_Os04g25410.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
LOC_Os07g12140.1 No alias RNA editing factor (POCO) 0.03 Archaeplastida
LOC_Os07g40750.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.05 Archaeplastida
LOC_Os10g35730.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida
LOC_Os10g35750.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.02 Archaeplastida
LOC_Os10g35760.2 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
LOC_Os12g34340.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.05 Archaeplastida
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 Archaeplastida
MA_10342185g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10431989g0010 No alias RNA editing factor (POCO) 0.05 Archaeplastida
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
MA_128872g0020 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 Archaeplastida
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.06 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
MA_77400g0010 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.03 Archaeplastida
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Archaeplastida
Pp3c21_11730V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.1 Archaeplastida
Solyc07g054090.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 Archaeplastida
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 Archaeplastida
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.05 Archaeplastida
Zm00001e012594_P001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.06 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 Archaeplastida
Zm00001e039746_P002 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 125 153
IPR002885 Pentatricopeptide_repeat 161 187
IPR002885 Pentatricopeptide_repeat 337 362
IPR002885 Pentatricopeptide_repeat 232 258
IPR002885 Pentatricopeptide_repeat 300 325
IPR002885 Pentatricopeptide_repeat 368 394
No external refs found!