1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00040p00197990

AMTR_s00040p00197990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.198

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0003924 (LandPlants) Phylogenetic Tree(s): OG_05_0003924_tree ,
OG_06_0005596 (SeedPlants) Phylogenetic Tree(s): OG_06_0005596_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00197990
Cluster HCCA: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037651001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_08091 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_30879 No alias Probable E3 ubiquitin-protein ligase XERICO... 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g57460.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_184439g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Pp3c22_15440V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc04g074790.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc07g006360.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e041370_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 86 129
No external refs found!