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  5. AMTR_s00040p00200990

AMTR_s00040p00200990 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.203

Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000662 (Archaeplastida) Phylogenetic Tree(s): OG0000662_tree ,
OG_05_0000467 (LandPlants) Phylogenetic Tree(s): OG_05_0000467_tree ,
OG_06_0008611 (SeedPlants) Phylogenetic Tree(s): OG_06_0008611_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00200990
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AT3G10000 EDA31 Homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G03680 PTL Duplicated homeodomain-like superfamily protein 0.03 Archaeplastida
GSVIVT01033792001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.05 Archaeplastida
GSVIVT01034705001 No alias RNA biosynthesis.transcriptional activation.Trihelix... 0.03 Archaeplastida
Gb_31300 No alias transcription factor (Trihelix) 0.02 Archaeplastida
Gb_38519 No alias transcription factor (Trihelix) 0.02 Archaeplastida
LOC_Os10g37240.4 No alias Trihelix transcription factor GT-2 OS=Arabidopsis... 0.03 Archaeplastida
MA_10427500g0030 No alias Trihelix transcription factor GTL1 OS=Arabidopsis... 0.03 Archaeplastida
MA_79519g0010 No alias transcription factor (Trihelix) 0.02 Archaeplastida
Pp3c18_11300V3.1 No alias Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
Solyc09g009250.3.1 No alias transcription factor (Trihelix) 0.02 Archaeplastida
Zm00001e000092_P003 No alias transcription factor (Trihelix) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000910 cytokinesis IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Neighborhood
BP GO:0009690 cytokinin metabolic process IEP Neighborhood
BP GO:0010817 regulation of hormone levels IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019139 cytokinin dehydrogenase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034754 cellular hormone metabolic process IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042445 hormone metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
MF GO:0047134 protein-disulfide reductase activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!