GSVIVT01020844001

Description : Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS16/VCL1 component

Gene families : OG0004935 (Archaeplastida) Phylogenetic Tree(s): OG0004935_tree ,
OG_05_0007045 (LandPlants) Phylogenetic Tree(s): OG_05_0007045_tree ,
OG_06_0007665 (SeedPlants) Phylogenetic Tree(s): OG_06_0007665_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01020844001
Cluster	HCCA: Cluster_220

Target	Alias	Description	ECC score	Gene Family Method
Gb_09954	No alias	component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes	0.04	Archaeplastida
LOC_Os01g47650.1	No alias	component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes	0.07	Archaeplastida
MA_74180g0010	No alias	Protein VACUOLELESS1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Mp6g01660.1	No alias	component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes	0.07	Archaeplastida
Smo80688	No alias	Vesicle trafficking.target membrane...	0.03	Archaeplastida
Solyc07g056220.3.1	No alias	component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003684	damaged DNA binding	IEP	Neighborhood
MF	GO:0003714	transcription corepressor activity	IEP	Neighborhood
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Neighborhood
MF	GO:0003916	DNA topoisomerase activity	IEP	Neighborhood
MF	GO:0004000	adenosine deaminase activity	IEP	Neighborhood
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
CC	GO:0005801	cis-Golgi network	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005875	microtubule associated complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006265	DNA topological change	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006289	nucleotide-excision repair	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006382	adenosine to inosine editing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006476	protein deacetylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006887	exocytosis	IEP	Neighborhood
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0007051	spindle organization	IEP	Neighborhood
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Neighborhood
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008565	protein transporter activity	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016311	dephosphorylation	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
BP	GO:0016553	base conversion or substitution editing	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016575	histone deacetylation	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0019239	deaminase activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030173	integral component of Golgi membrane	IEP	Neighborhood
CC	GO:0030906	retromer, cargo-selective complex	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0035601	protein deacylation	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044431	Golgi apparatus part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051225	spindle assembly	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
CC	GO:0070652	HAUS complex	IEP	Neighborhood
BP	GO:0070925	organelle assembly	IEP	Neighborhood
BP	GO:0071103	DNA conformation change	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:0098732	macromolecule deacylation	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006925	Vps16_C	506	819
IPR006926	Vps16_N	8	409

External Links

No external refs found!

GSVIVT01020844001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation