AMTR_s00040p00219190 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.241

Description : DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica

Gene families : OG0006468 (Archaeplastida) Phylogenetic Tree(s): OG0006468_tree ,
OG_05_0004455 (LandPlants) Phylogenetic Tree(s): OG_05_0004455_tree ,
OG_06_0002866 (SeedPlants) Phylogenetic Tree(s): OG_06_0002866_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00219190
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00218960	evm_27.TU.AmTr_v1...	No description available	0.03	Archaeplastida
AMTR_s00040p00219870	evm_27.TU.AmTr_v1...	DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00040p00220800	evm_27.TU.AmTr_v1...	No description available	0.02	Archaeplastida
AMTR_s00040p00221930	evm_27.TU.AmTr_v1...	DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006304	DNA modification	IEP	Neighborhood
BP	GO:0006305	DNA alkylation	IEP	Neighborhood
BP	GO:0006306	DNA methylation	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0044728	DNA methylation or demethylation	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR022702	Cytosine_MeTrfase1_RFD	21	145
IPR022702	Cytosine_MeTrfase1_RFD	317	442

External Links

No external refs found!