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  5. AMTR_s00040p00220310

AMTR_s00040p00220310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.246

Description : DNA (cytosine-5)-methyltransferase 2 OS=Arabidopsis thaliana


Gene families : OG0006468 (Archaeplastida) Phylogenetic Tree(s): OG0006468_tree ,
OG_05_0004455 (LandPlants) Phylogenetic Tree(s): OG_05_0004455_tree ,
OG_06_0002866 (SeedPlants) Phylogenetic Tree(s): OG_06_0002866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00220310
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00095710 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AMTR_s00040p00095760 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AMTR_s00040p00219000 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00040p00219400 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 4 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00040p00219870 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00040p00220090 evm_27.TU.AmTr_v1... DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.08 Archaeplastida
AMTR_s00080p00109490 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
InterPro domains Description Start Stop
IPR022702 Cytosine_MeTrfase1_RFD 290 414
IPR001025 BAH_dom 705 792
No external refs found!