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  5. AMTR_s00040p00220570

AMTR_s00040p00220570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.248

Description : DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica


Gene families : OG0001731 (Archaeplastida) Phylogenetic Tree(s): OG0001731_tree ,
OG_05_0020476 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019674 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00220570
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001366.1 No alias Chromatin organisation.DNA methylation.RNA-independent... 0.01 Archaeplastida
Cre03.g202150 No alias Putative DNA (cytosine-5)-methyltransferase CMT1... 0.01 Archaeplastida
GSVIVT01022824001 No alias DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006306 DNA methylation IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001525 C5_MeTfrase 65 136
No external refs found!