GSVIVT01021433001

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component

Gene families : OG0001762 (Archaeplastida) Phylogenetic Tree(s): OG0001762_tree ,
OG_05_0001750 (LandPlants) Phylogenetic Tree(s): OG_05_0001750_tree ,
OG_06_0001973 (SeedPlants) Phylogenetic Tree(s): OG_06_0001973_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01021433001
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00102800	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	Archaeplastida
AMTR_s00003p00234980	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
AT1G29965	No alias	Ribosomal protein L18ae/LX family protein	0.06	Archaeplastida
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.24	Archaeplastida
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.19	Archaeplastida
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	Archaeplastida
Gb_05341	No alias	component RPL18a of LSU proteome component	0.06	Archaeplastida
LOC_Os01g47660.1	No alias	component RPL18a of LSU proteome component	0.18	Archaeplastida
LOC_Os01g54870.1	No alias	component RPL18a of LSU proteome component	0.18	Archaeplastida
LOC_Os05g49030.1	No alias	component RPL18a of LSU proteome component	0.16	Archaeplastida
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.15	Archaeplastida
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.23	Archaeplastida
Pp3c12_7770V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.19	Archaeplastida
Pp3c13_12320V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.04	Archaeplastida
Pp3c20_15150V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.19	Archaeplastida
Pp3c3_11250V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.19	Archaeplastida
Pp3c8_13880V3.1	No alias	Ribosomal protein L18ae/LX family protein	0.15	Archaeplastida
Smo227198	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Solyc02g070640.3.1	No alias	component RPL18a of LSU proteome component	0.1	Archaeplastida
Solyc02g070650.2.1	No alias	component RPL18a of LSU proteome component	0.09	Archaeplastida
Solyc06g065590.4.1	No alias	component RPL18a of LSU proteome component	0.11	Archaeplastida
Solyc08g016180.3.1	No alias	component RPL18a of LSU proteome component	0.17	Archaeplastida
Zm00001e020218_P001	No alias	component RPL18a of LSU proteome component	0.17	Archaeplastida
Zm00001e026540_P001	No alias	component RPL18a of LSU proteome component	0.18	Archaeplastida
Zm00001e028015_P002	No alias	component RPL18a of LSU proteome component	0.15	Archaeplastida
Zm00001e032436_P001	No alias	component RPL18a of LSU proteome component	0.19	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003954	NADH dehydrogenase activity	IEP	Neighborhood
MF	GO:0004140	dephospho-CoA kinase activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Neighborhood
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Neighborhood
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
MF	GO:0030515	snoRNA binding	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Neighborhood
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Neighborhood
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	106

External Links

No external refs found!

GSVIVT01021433001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation