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  5. GSVIVT01021502001

GSVIVT01021502001


Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.Cullin-based ubiquitylation complexes.CUL4-DDB1 ubiquitination complexes.CUL4 scaffold component


Gene families : OG0001033 (Archaeplastida) Phylogenetic Tree(s): OG0001033_tree ,
OG_05_0004845 (LandPlants) Phylogenetic Tree(s): OG_05_0004845_tree ,
OG_06_0006458 (SeedPlants) Phylogenetic Tree(s): OG_06_0006458_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021502001
Cluster HCCA: Cluster_238

Target Alias Description ECC score Gene Family Method Actions
AT5G46210 ATCUL4, CUL4 cullin4 0.03 Archaeplastida
Cpa|evm.model.tig00000157.111 No alias Cullin-4 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre07.g324050 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_08728 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.04 Archaeplastida
LOC_Os03g57290.1 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 Archaeplastida
MA_10436569g0010 No alias Cullin-3A OS=Arabidopsis thaliana (sp|q9zvh4|cul3a_arath : 422.0) 0.03 Archaeplastida
Mp1g07340.1 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 Archaeplastida
Mp4g12190.1 No alias scaffold component CUL3 of CUL3-BTB E3 ligase complexes 0.02 Archaeplastida
Pp3c11_21000V3.1 No alias cullin 3 0.03 Archaeplastida
Pp3c12_14490V3.1 No alias cullin4 0.02 Archaeplastida
Pp3c7_5730V3.1 No alias cullin 3 0.03 Archaeplastida
Smo98222 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Solyc02g021470.4.1 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.03 Archaeplastida
Zm00001e005919_P001 No alias scaffold component CUL4 of CUL4-DDB1 ubiquitination... 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 734 794
IPR001373 Cullin_N 106 703
No external refs found!