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  5. GSVIVT01021534001

GSVIVT01021534001


Description : RNA biosynthesis.transcriptional activation.MADS box transcription factor


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021534001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00114420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.03 Archaeplastida
AT1G72350 No alias MADS-box transcription factor family protein 0.02 Archaeplastida
AT2G26320 AGL33 AGAMOUS-like 33 0.04 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os08g38590.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_502016g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.02 Archaeplastida
MA_899014g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9771g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.03 Archaeplastida
Pp3c4_3820V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c8_6890V3.1 No alias AGAMOUS-like 104 0.03 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Solyc01g106720.1.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc05g051825.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016790 thiolester hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 63
No external refs found!