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  5. GSVIVT01021547001

GSVIVT01021547001


Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana


Gene families : OG0009116 (Archaeplastida) Phylogenetic Tree(s): OG0009116_tree ,
OG_05_0008968 (LandPlants) Phylogenetic Tree(s): OG_05_0008968_tree ,
OG_06_0005695 (SeedPlants) Phylogenetic Tree(s): OG_06_0005695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021547001

Target Alias Description ECC score Gene Family Method Actions
AT1G30290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Gb_28559 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.07 Archaeplastida
LOC_Os12g42120.1 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.06 Archaeplastida
Solyc08g023490.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e017983_P001 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 616 665
IPR002885 Pentatricopeptide_repeat 300 349
IPR002885 Pentatricopeptide_repeat 441 490
IPR002885 Pentatricopeptide_repeat 511 548
IPR002885 Pentatricopeptide_repeat 688 711
IPR002885 Pentatricopeptide_repeat 269 294
IPR002885 Pentatricopeptide_repeat 237 263
IPR002885 Pentatricopeptide_repeat 406 434
IPR002885 Pentatricopeptide_repeat 368 398
IPR002885 Pentatricopeptide_repeat 577 609
No external refs found!