AMTR_s00040p00225520 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.265

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL35 component

Gene families : OG0002158 (Archaeplastida) Phylogenetic Tree(s): OG0002158_tree ,
OG_05_0002518 (LandPlants) Phylogenetic Tree(s): OG_05_0002518_tree ,
OG_06_0003253 (SeedPlants) Phylogenetic Tree(s): OG_06_0003253_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00040p00225520
Cluster	HCCA: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00034p00044200	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	Archaeplastida
AT2G39390	No alias	Ribosomal L29 family protein	0.07	Archaeplastida
AT3G09500	No alias	Ribosomal L29 family protein	0.03	Archaeplastida
AT3G55170	No alias	Ribosomal L29 family protein	0.04	Archaeplastida
AT5G02610	No alias	Ribosomal L29 family protein	0.04	Archaeplastida
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01005972001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
GSVIVT01025050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	Archaeplastida
MA_10429159g0010	No alias	component RPL35 of LSU proteome component	0.02	Archaeplastida
MA_10429159g0020	No alias	component RPL35 of LSU proteome component	0.04	Archaeplastida
MA_37003g0010	No alias	component RPL35 of LSU proteome component	0.04	Archaeplastida
MA_92240g0010	No alias	component RPL35 of LSU proteome component	0.02	Archaeplastida
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.04	Archaeplastida
Pp3c13_5200V3.1	No alias	Ribosomal L29 family protein	0.06	Archaeplastida
Pp3c26_13720V3.1	No alias	Ribosomal L29 family protein	0.06	Archaeplastida
Pp3c3_2800V3.1	No alias	Ribosomal L29 family protein	0.05	Archaeplastida
Pp3c4_30730V3.1	No alias	Ribosomal L29 family protein	0.05	Archaeplastida
Smo438324	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Smo79331	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	Archaeplastida
Solyc04g010240.3.1	No alias	component RPL35 of LSU proteome component	0.03	Archaeplastida
Solyc06g075620.3.1	No alias	component RPL35 of LSU proteome component	0.02	Archaeplastida
Zm00001e008428_P002	No alias	component RPL35 of LSU proteome component	0.03	Archaeplastida
Zm00001e014607_P001	No alias	component RPL35 of LSU proteome component	0.03	Archaeplastida
Zm00001e040695_P003	No alias	component RPL35 of LSU proteome component	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005885	Arp2/3 protein complex	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0007015	actin filament organization	IEP	Neighborhood
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0008154	actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0010638	positive regulation of organelle organization	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0030041	actin filament polymerization	IEP	Neighborhood
BP	GO:0030832	regulation of actin filament length	IEP	Neighborhood
BP	GO:0030833	regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Neighborhood
BP	GO:0031334	positive regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0032271	regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032273	positive regulation of protein polymerization	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Neighborhood
BP	GO:0032970	regulation of actin filament-based process	IEP	Neighborhood
BP	GO:0033043	regulation of organelle organization	IEP	Neighborhood
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0043254	regulation of protein complex assembly	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Neighborhood
BP	GO:0045010	actin nucleation	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0048522	positive regulation of cellular process	IEP	Neighborhood
BP	GO:0051128	regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051130	positive regulation of cellular component organization	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:0097435	supramolecular fiber organization	IEP	Neighborhood
BP	GO:0110053	regulation of actin filament organization	IEP	Neighborhood
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Neighborhood
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	15	72

External Links

No external refs found!

AMTR_s00040p00225520 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation