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  5. GSVIVT01021625001

GSVIVT01021625001


Description : RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.HD-ZIP III transcription factor


Gene families : OG0000862 (Archaeplastida) Phylogenetic Tree(s): OG0000862_tree ,
OG_05_0000983 (LandPlants) Phylogenetic Tree(s): OG_05_0000983_tree ,
OG_06_0000998 (SeedPlants) Phylogenetic Tree(s): OG_06_0000998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021625001
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00085520 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
AMTR_s00148p00033940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00155p00069240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
AT2G34710 PHB-1D, ATHB-14,... Homeobox-leucine zipper family protein / lipid-binding... 0.06 Archaeplastida
AT4G32880 HB-8, ATHB8, ATHB-8 homeobox gene 8 0.04 Archaeplastida
AT5G60690 IFL1, IFL, REV Homeobox-leucine zipper family protein / lipid-binding... 0.05 Archaeplastida
Gb_02083 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Gb_18245 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
LOC_Os03g01890.1 No alias transcription factor (HD-ZIP III) 0.07 Archaeplastida
LOC_Os03g43930.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
LOC_Os12g41860.1 No alias transcription factor (HD-ZIP III) 0.08 Archaeplastida
Mp1g24140.1 No alias transcription factor (HD-ZIP III) 0.02 Archaeplastida
Pp3c16_15450V3.1 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Archaeplastida
Pp3c4_5300V3.1 No alias homeobox gene 8 0.02 Archaeplastida
Smo77000 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Solyc02g024070.3.1 No alias transcription factor (HD-ZIP III) 0.05 Archaeplastida
Solyc03g120910.4.1 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Solyc08g066500.4.1 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Solyc11g069470.3.1 No alias transcription factor (HD-ZIP III) 0.06 Archaeplastida
Zm00001e000073_P001 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida
Zm00001e004553_P004 No alias transcription factor (HD-ZIP III) 0.03 Archaeplastida
Zm00001e018118_P002 No alias transcription factor (HD-ZIP III) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013978 MEKHLA 700 844
IPR002913 START_lipid-bd_dom 166 373
IPR001356 Homeobox_dom 17 75
No external refs found!