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  5. GSVIVT01021975001

GSVIVT01021975001


Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.small subunit proteome.psRPS4 component


Gene families : OG0003680 (Archaeplastida) Phylogenetic Tree(s): OG0003680_tree ,
OG_05_0003482 (LandPlants) Phylogenetic Tree(s): OG_05_0003482_tree ,
OG_06_0002285 (SeedPlants) Phylogenetic Tree(s): OG_06_0002285_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021975001
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.1 Archaeplastida
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.04 Archaeplastida
Gb_11360 No alias component psRPS4 of small ribosomal subunit proteome 0.04 Archaeplastida
LOC_Os04g16738.1 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
LOC_Os04g16764.1 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
LOC_Os10g38214.1 No alias component psRPS4 of small ribosomal subunit proteome 0.09 Archaeplastida
Solyc00g500060.1.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e003895_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e003908_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042033_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042054_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042078_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042098_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida
Zm00001e042353_P001 No alias component psRPS4 of small ribosomal subunit proteome 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006813 potassium ion transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009539 photosystem II reaction center IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 91 128
IPR001912 Ribosomal_S4/S9_N 4 88
No external refs found!