GSVIVT01022339001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0008879 (SeedPlants) Phylogenetic Tree(s): OG_06_0008879_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022339001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00138p00054750 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AT2G32810 BGAL9 beta galactosidase 9 0.03 Archaeplastida
AT4G35010 BGAL11 beta-galactosidase 11 0.04 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Gb_40554 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Gb_41532 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.08 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_10436863g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_11388g0010 No alias Beta-galactosidase 3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_168609g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Pp3c9_9350V3.1 No alias beta galactosidase 9 0.03 Archaeplastida
Solyc01g111540.4.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.06 Archaeplastida
Solyc02g084720.3.1 No alias beta-galactosidase (BGAL) 0.09 Archaeplastida
Solyc06g062580.3.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e000496_P002 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Zm00001e019757_P001 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida
Zm00001e020528_P001 No alias beta-galactosidase (BGAL) 0.06 Archaeplastida
Zm00001e039014_P001 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0004615 phosphomannomutase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009225 nucleotide-sugar metabolic process IEP Neighborhood
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009298 GDP-mannose biosynthetic process IEP Neighborhood
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
BP GO:0015689 molybdate ion transport IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0019673 GDP-mannose metabolic process IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR031330 Gly_Hdrlase_35_cat 29 334
IPR000922 Lectin_gal-bd_dom 769 846
No external refs found!