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  5. GSVIVT01022403001

GSVIVT01022403001


Description : Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban


Gene families : OG0001030 (Archaeplastida) Phylogenetic Tree(s): OG0001030_tree ,
OG_05_0000707 (LandPlants) Phylogenetic Tree(s): OG_05_0000707_tree ,
OG_06_0000483 (SeedPlants) Phylogenetic Tree(s): OG_06_0000483_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022403001
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.06 Archaeplastida
AMTR_s00012p00184400 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain... 0.06 Archaeplastida
AMTR_s00606p00006850 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 Archaeplastida
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.09 Archaeplastida
ATMG00280 ORF110A Ribulose bisphosphate carboxylase large chain, catalytic domain 0.04 Archaeplastida
Gb_07644 No alias Ribulose bisphosphate carboxylase large chain... 0.09 Archaeplastida
Gb_15502 No alias Ribulose bisphosphate carboxylase large chain... 0.09 Archaeplastida
Gb_18620 No alias Ribulose bisphosphate carboxylase large chain... 0.04 Archaeplastida
Gb_25934 No alias Ribulose bisphosphate carboxylase large chain... 0.01 Archaeplastida
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.05 Archaeplastida
Gb_37464 No alias Ribulose bisphosphate carboxylase large chain... 0.09 Archaeplastida
LOC_Os01g58020.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.09 Archaeplastida
LOC_Os05g35330.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 Archaeplastida
LOC_Os10g21268.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.09 Archaeplastida
LOC_Os11g32770.1 No alias Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 Archaeplastida
LOC_Os12g10580.1 No alias component psRPS15 of small ribosomal subunit proteome 0.09 Archaeplastida
MA_103636g0010 No alias Ribulose bisphosphate carboxylase large chain... 0.03 Archaeplastida
Mp3g01300.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Smo137874 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.06 Archaeplastida
Solyc00g500063.1.1 No alias large subunit of ribulose-1,5-bisphosphat... 0.08 Archaeplastida
Solyc07g021200.1.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.07 Archaeplastida
Solyc12g062540.3.1 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.01 Archaeplastida
Solyc12g062550.1.1 No alias Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.01 Archaeplastida
Zm00001e002755_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.02 Archaeplastida
Zm00001e031080_P001 No alias Ribulose bisphosphate carboxylase large chain OS=Zea... 0.05 Archaeplastida
Zm00001e042029_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida
Zm00001e042051_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida
Zm00001e042083_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida
Zm00001e042095_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida
Zm00001e042403_P001 No alias large subunit of ribulose-1,5-bisphosphat... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006091 generation of precursor metabolites and energy IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009123 nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009150 purine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Neighborhood
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009259 ribonucleotide metabolic process IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
MF GO:0015002 heme-copper terminal oxidase activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
BP GO:0019693 ribose phosphate metabolic process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022900 electron transport chain IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
BP GO:0046034 ATP metabolic process IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000685 RuBisCO_lsu_C 1 95
No external refs found!