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  5. GSVIVT01022440001

GSVIVT01022440001


Description : Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana


Gene families : OG0000959 (Archaeplastida) Phylogenetic Tree(s): OG0000959_tree ,
OG_05_0000587 (LandPlants) Phylogenetic Tree(s): OG_05_0000587_tree ,
OG_06_0012773 (SeedPlants) Phylogenetic Tree(s): OG_06_0012773_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01022440001
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00121730 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 Archaeplastida
AT2G44710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Gb_14149 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.07 Archaeplastida
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os04g45930.3 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os07g27110.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 Archaeplastida
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
MA_8643g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_92056g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 Archaeplastida
MA_95363g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c27_8310V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc02g062290.2.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida
Solyc10g062340.2.1 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e007365_P001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e041355_P001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 38
IPR000504 RRM_dom 50 120
IPR000504 RRM_dom 149 214
No external refs found!