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  5. AMTR_s00041p00084080

AMTR_s00041p00084080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.50

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPSa component


Gene families : OG0002241 (Archaeplastida) Phylogenetic Tree(s): OG0002241_tree ,
OG_05_0002670 (LandPlants) Phylogenetic Tree(s): OG_05_0002670_tree ,
OG_06_0002731 (SeedPlants) Phylogenetic Tree(s): OG_06_0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00084080
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.12 Archaeplastida
AT3G04770 RPSAb 40s ribosomal protein SA B 0.02 Archaeplastida
Cre10.g432800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
GSVIVT01016695001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 Archaeplastida
Gb_02349 No alias component RPSa of SSU proteome 0.04 Archaeplastida
Gb_10091 No alias component RPSa of SSU proteome 0.04 Archaeplastida
LOC_Os03g08440.1 No alias component RPSa of SSU proteome 0.06 Archaeplastida
LOC_Os07g42450.1 No alias component RPSa of SSU proteome 0.11 Archaeplastida
MA_10436984g0020 No alias component RPSa of SSU proteome 0.08 Archaeplastida
MA_112104g0010 No alias component RPSa of SSU proteome 0.15 Archaeplastida
MA_6868827g0010 No alias No annotation 0.03 Archaeplastida
Mp2g26290.1 No alias component RPSa of SSU proteome 0.15 Archaeplastida
Pp3c14_15700V3.1 No alias 40s ribosomal protein SA B 0.07 Archaeplastida
Pp3c14_17310V3.1 No alias 40s ribosomal protein SA B 0.05 Archaeplastida
Pp3c17_17600V3.1 No alias 40s ribosomal protein SA 0.12 Archaeplastida
Pp3c1_24120V3.1 No alias 40s ribosomal protein SA 0.06 Archaeplastida
Solyc03g019780.4.1 No alias component RPSa of SSU proteome 0.17 Archaeplastida
Solyc06g072120.3.1 No alias component RPSa of SSU proteome 0.13 Archaeplastida
Zm00001e000273_P001 No alias component RPSa of SSU proteome 0.11 Archaeplastida
Zm00001e010780_P001 No alias component RPSa of SSU proteome 0.13 Archaeplastida
Zm00001e038859_P001 No alias component RPSa of SSU proteome 0.11 Archaeplastida
Zm00001e038860_P002 No alias component RPSa of SSU proteome 0.02 Archaeplastida
Zm00001e038933_P001 No alias component RPSa of SSU proteome 0.12 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Neighborhood
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009141 nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009211 pyrimidine deoxyribonucleoside triphosphate metabolic process IEP Neighborhood
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Neighborhood
BP GO:0019692 deoxyribose phosphate metabolic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
MF GO:0030955 potassium ion binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0031420 alkali metal ion binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0043626 PCNA complex IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044796 DNA polymerase processivity factor complex IEP Neighborhood
BP GO:0046080 dUTP metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 117 184
IPR001865 Ribosomal_S2 17 112
No external refs found!