GSVIVT01023159001


Description : Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana


Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023159001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00236970 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49240,... 0.06 Archaeplastida
AT1G10270 GRP23 glutamine-rich protein 23 0.03 Archaeplastida
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_33759 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 Archaeplastida
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 Archaeplastida
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.03 Archaeplastida
Solyc01g103160.3.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.04 Archaeplastida
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 394 418
IPR002885 Pentatricopeptide_repeat 208 237
IPR002885 Pentatricopeptide_repeat 498 527
IPR002885 Pentatricopeptide_repeat 313 341
IPR002885 Pentatricopeptide_repeat 136 159
IPR002885 Pentatricopeptide_repeat 244 271
IPR002885 Pentatricopeptide_repeat 354 378
IPR002885 Pentatricopeptide_repeat 166 188
No external refs found!