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  5. AMTR_s00041p00100290

AMTR_s00041p00100290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.67

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.Prp17 component


Gene families : OG0005608 (Archaeplastida) Phylogenetic Tree(s): OG0005608_tree ,
OG_05_0006441 (LandPlants) Phylogenetic Tree(s): OG_05_0006441_tree ,
OG_06_0006648 (SeedPlants) Phylogenetic Tree(s): OG_06_0006648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00100290
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
Cre04.g226450 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Zm00001e001921_P002 No alias component Prp17 of non-snRNP MOS4-associated complex 0.04 Archaeplastida
Zm00001e038006_P002 No alias component Prp17 of non-snRNP MOS4-associated complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
MF GO:0047800 cysteamine dioxygenase activity IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 415 452
IPR001680 WD40_repeat 547 582
IPR001680 WD40_repeat 286 323
IPR001680 WD40_repeat 329 366
No external refs found!