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  5. GSVIVT01023345001

GSVIVT01023345001


Description : Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023345001
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00087070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G20540 MEF21 mitochondrial editing factor 21 0.04 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT5G16860 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01003650001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01035759001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.05 Archaeplastida
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.06 Archaeplastida
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.03 Archaeplastida
Gb_06370 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_14617 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_25869 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.02 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_32256 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_33062 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
LOC_Os06g03570.2 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.02 Archaeplastida
LOC_Os07g44170.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
MA_100287g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.05 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_210823g0010 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.04 Archaeplastida
MA_211508g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.08 Archaeplastida
MA_25729g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.08 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_8210920g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc02g082160.2.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Solyc03g063160.1.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc03g098420.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc04g016540.2.1 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.08 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.03 Archaeplastida
Solyc10g054730.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Solyc11g017290.1.1 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.03 Archaeplastida
Solyc11g040060.3.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.04 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.05 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 444 469
IPR002885 Pentatricopeptide_repeat 342 362
IPR002885 Pentatricopeptide_repeat 172 195
IPR002885 Pentatricopeptide_repeat 199 229
IPR002885 Pentatricopeptide_repeat 269 313
IPR002885 Pentatricopeptide_repeat 370 417
IPR002885 Pentatricopeptide_repeat 95 143
IPR032867 DYW_dom 546 666
No external refs found!