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  5. GSVIVT01023786001

GSVIVT01023786001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004723 (SeedPlants) Phylogenetic Tree(s): OG_06_0004723_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023786001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G05310 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G19150 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01013827001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01013838001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_01460 No alias pectin methylesterase 0.02 Archaeplastida
Gb_23209 No alias pectin methylesterase 0.04 Archaeplastida
Gb_27225 No alias pectin methylesterase 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.03 Archaeplastida
Gb_38324 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os01g44340.1 No alias pectin methylesterase 0.04 Archaeplastida
MA_10267810g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_10428610g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_304854g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.03 Archaeplastida
Mp2g01420.1 No alias pectin methylesterase 0.03 Archaeplastida
Mp4g01190.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03920.1 No alias pectin methylesterase 0.02 Archaeplastida
Mp5g03930.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c10_18650V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c10_20120V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c18_13190V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c19_8330V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c25_3840V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c25_760V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_30560V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c3_32350V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c3_35240V3.1 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
Pp3c5_12820V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Solyc07g043240.4.1 No alias pectin methylesterase 0.05 Archaeplastida
Solyc09g091730.4.1 No alias pectin methylesterase 0.02 Archaeplastida
Solyc10g083820.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020795_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e027944_P002 No alias pectin methylesterase 0.02 Archaeplastida
Zm00001e033546_P001 No alias pectin methylesterase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 66 339
No external refs found!