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  5. GSVIVT01023828001

GSVIVT01023828001


Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT4 regulatory component


Gene families : OG0003274 (Archaeplastida) Phylogenetic Tree(s): OG0003274_tree ,
OG_05_0003195 (LandPlants) Phylogenetic Tree(s): OG_05_0003195_tree ,
OG_06_0003487 (SeedPlants) Phylogenetic Tree(s): OG_06_0003487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023828001
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT5G43010 RPT4A regulatory particle triple-A ATPase 4A 0.03 Archaeplastida
Cpa|evm.model.tig00000718.6 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
Cre17.g710150 No alias Protein degradation.26S proteasome.regulatory... 0.04 Archaeplastida
LOC_Os02g10640.1 No alias regulatory component RPT4 of 26S proteasome 0.04 Archaeplastida
LOC_Os06g40560.1 No alias regulatory component RPT4 of 26S proteasome 0.03 Archaeplastida
MA_137771g0010 No alias regulatory component RPT4 of 26S proteasome 0.04 Archaeplastida
Mp7g14270.1 No alias regulatory component RPT4 of 26S proteasome 0.03 Archaeplastida
Pp3c12_8530V3.1 No alias AAA-type ATPase family protein 0.03 Archaeplastida
Pp3c4_15180V3.1 No alias AAA-type ATPase family protein 0.02 Archaeplastida
Solyc01g109940.3.1 No alias regulatory component RPT4 of 26S proteasome 0.07 Archaeplastida
Zm00001e014032_P001 No alias regulatory component RPT4 of 26S proteasome 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 176 309
IPR032501 Prot_ATP_ID_OB 63 118
No external refs found!