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  5. GSVIVT01023885001

GSVIVT01023885001


Description : Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana


Gene families : OG0009700 (Archaeplastida) Phylogenetic Tree(s): OG0009700_tree ,
OG_05_0009739 (LandPlants) Phylogenetic Tree(s): OG_05_0009739_tree ,
OG_06_0007391 (SeedPlants) Phylogenetic Tree(s): OG_06_0007391_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023885001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00147240 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17140... 0.03 Archaeplastida
Gb_28457 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.04 Archaeplastida
LOC_Os02g03930.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.03 Archaeplastida
Solyc02g021020.4.1 No alias Pentatricopeptide repeat-containing protein At2g17140... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 149 198
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 219 268
IPR002885 Pentatricopeptide_repeat 561 608
IPR002885 Pentatricopeptide_repeat 631 680
IPR002885 Pentatricopeptide_repeat 332 377
IPR002885 Pentatricopeptide_repeat 740 767
IPR002885 Pentatricopeptide_repeat 293 322
IPR002885 Pentatricopeptide_repeat 467 496
IPR002885 Pentatricopeptide_repeat 523 555
No external refs found!