1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01023966001

GSVIVT01023966001


Description : RNA processing.organelle machineries.RNA editing.mitochondrial RNA editing.MEF9 RNA editing factor


Gene families : OG0011967 (Archaeplastida) Phylogenetic Tree(s): OG0011967_tree ,
OG_05_0010015 (LandPlants) Phylogenetic Tree(s): OG_05_0010015_tree ,
OG_06_0010840 (SeedPlants) Phylogenetic Tree(s): OG_06_0010840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01023966001
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.06 Archaeplastida
MA_10211068g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0003972 RNA ligase (ATP) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008452 RNA ligase activity IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 87 109
IPR002885 Pentatricopeptide_repeat 157 184
IPR002885 Pentatricopeptide_repeat 218 265
IPR002885 Pentatricopeptide_repeat 14 45
IPR002885 Pentatricopeptide_repeat 320 367
IPR002885 Pentatricopeptide_repeat 191 214
IPR002885 Pentatricopeptide_repeat 293 316
IPR002885 Pentatricopeptide_repeat 128 156
IPR002885 Pentatricopeptide_repeat 397 418
No external refs found!