Description : Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana
Gene families : OG0009780 (Archaeplastida) Phylogenetic Tree(s): OG0009780_tree ,
OG_05_0012916 (LandPlants) Phylogenetic Tree(s): OG_05_0012916_tree ,
OG_06_0012950 (SeedPlants) Phylogenetic Tree(s): OG_06_0012950_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: GSVIVT01024061001 | |
Cluster | HCCA: Cluster_143 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Solyc01g100340.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g09190... | 0.13 | Archaeplastida | |
Solyc03g006990.1.1 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005488 | binding | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 287 | 335 |
IPR002885 | Pentatricopeptide_repeat | 390 | 437 |
IPR002885 | Pentatricopeptide_repeat | 231 | 256 |
IPR002885 | Pentatricopeptide_repeat | 362 | 385 |
IPR002885 | Pentatricopeptide_repeat | 158 | 188 |
IPR002885 | Pentatricopeptide_repeat | 465 | 489 |
IPR002885 | Pentatricopeptide_repeat | 99 | 125 |
IPR002885 | Pentatricopeptide_repeat | 127 | 156 |
No external refs found! |