GSVIVT01024061001


Description : Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana


Gene families : OG0009780 (Archaeplastida) Phylogenetic Tree(s): OG0009780_tree ,
OG_05_0012916 (LandPlants) Phylogenetic Tree(s): OG_05_0012916_tree ,
OG_06_0012950 (SeedPlants) Phylogenetic Tree(s): OG_06_0012950_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024061001
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Solyc01g100340.4.1 No alias Pentatricopeptide repeat-containing protein At1g09190... 0.13 Archaeplastida
Solyc03g006990.1.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 287 335
IPR002885 Pentatricopeptide_repeat 390 437
IPR002885 Pentatricopeptide_repeat 231 256
IPR002885 Pentatricopeptide_repeat 362 385
IPR002885 Pentatricopeptide_repeat 158 188
IPR002885 Pentatricopeptide_repeat 465 489
IPR002885 Pentatricopeptide_repeat 99 125
IPR002885 Pentatricopeptide_repeat 127 156
No external refs found!