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  5. GSVIVT01024173001

GSVIVT01024173001


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/DBB transcription factor


Gene families : OG0000461 (Archaeplastida) Phylogenetic Tree(s): OG0000461_tree ,
OG_05_0004244 (LandPlants) Phylogenetic Tree(s): OG_05_0004244_tree ,
OG_06_0005339 (SeedPlants) Phylogenetic Tree(s): OG_06_0005339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024173001
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00182p00043350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.07 Archaeplastida
AT1G06040 STO B-box zinc finger family protein 0.04 Archaeplastida
AT2G21320 No alias B-box zinc finger family protein 0.08 Archaeplastida
AT2G31380 STH salt tolerance homologue 0.05 Archaeplastida
AT4G38960 No alias B-box type zinc finger family protein 0.03 Archaeplastida
LOC_Os02g39360.1 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida
LOC_Os04g41560.2 No alias transcription factor (BBX-DBB) 0.04 Archaeplastida
LOC_Os09g35880.1 No alias transcription factor (BBX-DBB) 0.08 Archaeplastida
Pp3c17_14230V3.1 No alias light-regulated zinc finger protein 1 0.03 Archaeplastida
Pp3c7_5280V3.1 No alias B-box type zinc finger family protein 0.04 Archaeplastida
Smo111647 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
Solyc01g110370.4.1 No alias transcription factor (BBX-DBB) 0.07 Archaeplastida
Solyc06g073180.3.1 No alias transcription factor (BBX-DBB) 0.07 Archaeplastida
Solyc12g089240.2.1 No alias transcription factor (BBX-DBB) 0.02 Archaeplastida
Zm00001e010221_P001 No alias transcription factor (BBX-DBB) 0.05 Archaeplastida
Zm00001e015053_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e022915_P001 No alias transcription factor (BBX-DBB) 0.04 Archaeplastida
Zm00001e034791_P001 No alias transcription factor (BBX-DBB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 3 41
IPR000315 Znf_B-box 52 85
No external refs found!