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  5. GSVIVT01024457001

GSVIVT01024457001


Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024457001
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00265800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.13 Archaeplastida
MA_712594g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.09 Archaeplastida
MA_8988374g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida
Pp3c25_7340V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Smo166434 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.02 Archaeplastida
Solyc03g096830.4.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.04 Archaeplastida
Zm00001e036242_P002 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 333 365
IPR002885 Pentatricopeptide_repeat 197 241
IPR002885 Pentatricopeptide_repeat 446 489
IPR002885 Pentatricopeptide_repeat 372 420
IPR002885 Pentatricopeptide_repeat 256 315
IPR002885 Pentatricopeptide_repeat 602 654
IPR002885 Pentatricopeptide_repeat 665 712
No external refs found!