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  5. GSVIVT01024661001

GSVIVT01024661001


Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000884 (Archaeplastida) Phylogenetic Tree(s): OG0000884_tree ,
OG_05_0000594 (LandPlants) Phylogenetic Tree(s): OG_05_0000594_tree ,
OG_06_0000583 (SeedPlants) Phylogenetic Tree(s): OG_06_0000583_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01024661001
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00156610 evm_27.TU.AmTr_v1... No description available 0.07 Archaeplastida
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.04 Archaeplastida
AT1G68520 No alias B-box type zinc finger protein with CCT domain 0.08 Archaeplastida
AT5G57180 CIA2 chloroplast import apparatus 2 0.04 Archaeplastida
LOC_Os02g49880.1 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
LOC_Os03g50310.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Pp3c22_5440V3.1 No alias B-box type zinc finger protein with CCT domain 0.02 Archaeplastida
Solyc03g119540.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Solyc04g007210.3.1 No alias transcription factor (BBX-CO) 0.07 Archaeplastida
Solyc05g009310.3.1 No alias transcription factor (BBX-CO) 0.1 Archaeplastida
Solyc07g008540.3.1 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e015732_P002 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 51 93
No external refs found!