GSVIVT01024918001

Description : Pumilio homolog 1 OS=Arabidopsis thaliana

Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01024918001
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00251030	evm_27.TU.AmTr_v1...	Pumilio homolog 2 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_31285	No alias	Pumilio homolog 2 OS=Arabidopsis thaliana...	0.03	Archaeplastida
LOC_Os01g74030.1	No alias	Pumilio homolog 1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Pp3c3_36740V3.1	No alias	pumilio 1	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
BP	GO:0016255	attachment of GPI anchor to protein	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
CC	GO:0042765	GPI-anchor transamidase complex	IEP	Neighborhood
CC	GO:0044432	endoplasmic reticulum part	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001313	Pumilio_RNA-bd_rpt	98	128
IPR001313	Pumilio_RNA-bd_rpt	170	200
IPR001313	Pumilio_RNA-bd_rpt	61	92
IPR001313	Pumilio_RNA-bd_rpt	243	274
IPR001313	Pumilio_RNA-bd_rpt	26	56
IPR001313	Pumilio_RNA-bd_rpt	135	167
IPR001313	Pumilio_RNA-bd_rpt	292	318
IPR001313	Pumilio_RNA-bd_rpt	207	231
IPR012940	NABP	1	24

External Links

No external refs found!