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  5. GSVIVT01025023001

GSVIVT01025023001


Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025023001
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00228620 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
AMTR_s00085p00145460 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.03 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.03 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.03 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Gb_07044 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_12082 No alias histone (H2B) 0.02 Archaeplastida
Gb_29619 No alias histone (H2B) 0.02 Archaeplastida
Gb_32754 No alias histone (H2B) 0.04 Archaeplastida
Gb_41617 No alias histone (H2B) 0.02 Archaeplastida
LOC_Os01g05900.1 No alias histone (H2B) 0.02 Archaeplastida
LOC_Os01g06010.1 No alias histone (H2B) 0.03 Archaeplastida
LOC_Os08g38300.1 No alias histone (H2B) 0.02 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.03 Archaeplastida
Mp7g05430.1 No alias histone (H2B) 0.02 Archaeplastida
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.01 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.02 Archaeplastida
Solyc12g011455.1.1 No alias histone (H2B) 0.02 Archaeplastida
Solyc12g013510.1.1 No alias histone (H2B) 0.01 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.02 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.01 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.02 Archaeplastida
Zm00001e041296_P001 No alias histone (H2B) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Neighborhood
BP GO:0015986 ATP synthesis coupled proton transport IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 92
No external refs found!