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  5. GSVIVT01025041001

GSVIVT01025041001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23a component


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree ,
OG_05_0002661 (LandPlants) Phylogenetic Tree(s): OG_05_0002661_tree ,
OG_06_0002546 (SeedPlants) Phylogenetic Tree(s): OG_06_0002546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025041001
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 Archaeplastida
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.03 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.03 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
LOC_Os04g42270.2 No alias component RPL23a of LSU proteome component 0.04 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.05 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.04 Archaeplastida
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.03 Archaeplastida
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.04 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.04 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.03 Archaeplastida
Zm00001e031062_P001 No alias component RPL23a of LSU proteome component 0.06 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
InterPro domains Description Start Stop
IPR013025 Ribosomal_L25/23 75 137
IPR005633 Ribosomal_L23/L25_N 15 65
No external refs found!