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  5. GSVIVT01025079001

GSVIVT01025079001


Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 1


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006324 (LandPlants) Phylogenetic Tree(s): OG_05_0006324_tree ,
OG_06_0006832 (SeedPlants) Phylogenetic Tree(s): OG_06_0006832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025079001
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00196820 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Cpa|evm.model.tig00022075.5 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g680900 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
LOC_Os02g05880.1 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida
LOC_Os04g41490.1 No alias subunit 1 of Pol III RNA polymerase 0.06 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_8544g0010 No alias subunit 1 of Pol II RNA polymerase 0.07 Archaeplastida
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.02 Archaeplastida
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.09 Archaeplastida
Pp3c14_14540V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c15_5270V3.1 No alias nuclear RNA polymerase D1B 0.04 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Smo442419 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.1 Archaeplastida
Zm00001e007729_P001 No alias subunit 1 of Pol III RNA polymerase 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 526 700
IPR000722 RNA_pol_asu 357 523
IPR007083 RNA_pol_Rpb1_4 725 831
IPR007081 RNA_pol_Rpb1_5 838 1753
IPR007080 RNA_pol_Rpb1_1 19 355
No external refs found!