GSVIVT01025128001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025128001
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
AT1G07900 LBD1 LOB domain-containing protein 1 0.04 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.02 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.03 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.02 Archaeplastida
AT3G11090 LBD21 LOB domain-containing protein 21 0.07 Archaeplastida
GSVIVT01008080001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01016335001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_03653 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_161608g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_16646g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_290245g0010 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.02 Archaeplastida
Solyc02g067800.4.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Solyc02g069440.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc03g095940.1.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc06g007390.4.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e038429_P001 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 40 137
No external refs found!