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  5. GSVIVT01025170001

GSVIVT01025170001


Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0001075 (SeedPlants) Phylogenetic Tree(s): OG_06_0001075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025170001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00136p00108810 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AMTR_s00138p00054750 evm_27.TU.AmTr_v1... Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
AT3G13750 BGAL1 beta galactosidase 1 0.03 Archaeplastida
AT4G26140 BGAL12 beta-galactosidase 12 0.03 Archaeplastida
GSVIVT01008835001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
GSVIVT01016849001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
Gb_12091 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Gb_40554 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
Gb_41532 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.06 Archaeplastida
LOC_Os01g39830.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
LOC_Os01g65460.1 No alias 1,2-beta-galactosidase. beta-galactosidase (BGAL) 0.04 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
LOC_Os03g06940.1 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.06 Archaeplastida
Solyc01g111540.4.1 No alias beta-galactosidase (BGAL) 0.06 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Solyc02g084720.3.1 No alias beta-galactosidase (BGAL) 0.07 Archaeplastida
Solyc06g062580.3.1 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e003992_P005 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e020528_P001 No alias beta-galactosidase (BGAL) 0.05 Archaeplastida
Zm00001e039014_P001 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR031330 Gly_Hdrlase_35_cat 33 337
IPR000922 Lectin_gal-bd_dom 768 845
No external refs found!