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  5. GSVIVT01025181001

GSVIVT01025181001


Description : Chromatin organisation.chromatin remodeling complexes.RVB helicase component


Gene families : OG0005047 (Archaeplastida) Phylogenetic Tree(s): OG0005047_tree ,
OG_05_0006020 (LandPlants) Phylogenetic Tree(s): OG_05_0006020_tree ,
OG_06_0006774 (SeedPlants) Phylogenetic Tree(s): OG_06_0006774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025181001
Cluster HCCA: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
Gb_29420 No alias helicase component RVB of chromatin remodeling complex 0.05 Archaeplastida
LOC_Os07g08170.1 No alias helicase component RVB of chromatin remodeling complex 0.05 Archaeplastida
MA_10432659g0010 No alias helicase component RVB of chromatin remodeling complex 0.03 Archaeplastida
Zm00001e013544_P001 No alias helicase component RVB of chromatin remodeling complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
InterPro domains Description Start Stop
IPR010339 TIP49_C 14 364
No external refs found!