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  5. GSVIVT01025198001

GSVIVT01025198001


Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0001322 (LandPlants) Phylogenetic Tree(s): OG_05_0001322_tree ,
OG_06_0001040 (SeedPlants) Phylogenetic Tree(s): OG_06_0001040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025198001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00141830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 Archaeplastida
AT5G60450 ARF4 auxin response factor 4 0.03 Archaeplastida
GSVIVT01016266001 No alias Auxin response factor 18 OS=Oryza sativa subsp. japonica 0.07 Archaeplastida
GSVIVT01021552001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01023149001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.01 Archaeplastida
LOC_Os04g36054.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os04g56850.1 No alias transcription factor (ARF) 0.01 Archaeplastida
LOC_Os12g29520.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Zm00001e039552_P004 No alias transcription factor (ARF) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0043085 positive regulation of catalytic activity IEP Neighborhood
BP GO:0044093 positive regulation of molecular function IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR010525 Auxin_resp 162 245
IPR003340 B3_DNA-bd 56 137
No external refs found!