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  5. GSVIVT01025389001

GSVIVT01025389001


Description : Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025389001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.02 Archaeplastida
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01016860001 No alias Putative pentatricopeptide repeat-containing protein... 0.2 Archaeplastida
LOC_Os01g41650.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc01g081560.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Solyc01g090510.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc02g014360.3.1 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
Solyc02g068630.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc02g072020.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida
Solyc03g063690.1.1 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Solyc04g009210.1.1 No alias Pentatricopeptide repeat-containing protein At5g08305... 0.02 Archaeplastida
Solyc04g076330.3.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Solyc05g012630.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc06g062610.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc06g069700.4.1 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.03 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.05 Archaeplastida
Solyc07g055310.1.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc09g009950.4.1 No alias RNA editing factor (MEF10) 0.03 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.03 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc11g005970.1.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.08 Archaeplastida
Solyc12g099620.1.1 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.05 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
Zm00001e023800_P003 No alias RNA editing factor (CLB19) 0.06 Archaeplastida
Zm00001e035817_P001 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 77 103
IPR002885 Pentatricopeptide_repeat 250 275
IPR002885 Pentatricopeptide_repeat 49 74
IPR002885 Pentatricopeptide_repeat 176 223
No external refs found!